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Bioedit Company sequence identity matrix tool in bioedit
Sequence Identity Matrix Tool In Bioedit, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequence+identity+matrix/identity+matrix+sequence/pm41803889-53-11-16
Average 86 stars, based on 1 article reviews
sequence identity matrix tool in bioedit - by Bioz Stars, 2026-10
86/100 stars

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Sequencing:

Article Title: Molecular characterization of Hepatozoon canis in dogs from Can Tho in Vietnam
Article Snippet: .. The similarity of nucleotide sequences was evaluated using a sequence identity matrix in Bioedit v.7.0.5.3. ..

Article Title: Transcriptional Silencing of 35S rDNA in Tragopogon porrifolius Correlates with Cytosine Methylation in Sequence-Specific Manner.
Article Snippet: .. The sequence identity between individual promoters was computed from the SNP distributions using the Sequence Identity matrix implemented in BioEdit 7.2.5 (12/11/2013) (Table S1). .. Statistical supports of the differences between samples (methylation density between rDNA variants, between tissues, and between individual cytosines) were estimated by both the non-parametric Mann–Whitney U-test (http://vassarstats.net/utest.html; access from 11 March 2022 to 13 February 2024) and parametric Student’s t-test (Microsoft Excel, Microsoft 365).

Article Title: Molecular characterization and clinical insights into feline chaphamaparvovirus (FeChPV) in cats from Thailand.
Article Snippet: .. Multiple sequence alignments were performed using MAFFT online service (available at https://mafft.cbrc.jp/alignment/server/index.html) (Katoh et al., 2017), and the sequence identity matrices of the complete CDS from FeChPV Thai strains and the databases were generated using Sequence Identity Matrix available in BioEdit. .. The best-fit models for phylogenetic analyses were the Tamura-Nei model with gamma distribution (TN93 + G + I) for the CDS and NS1 gene and the Hasegawa-Kishino-Yano (HKY + G + I) for the VP1 gene.

Article Title: Genetic Diversity of Equid Herpesvirus 5 in Temporal Samples from Mares and Their Foals at Three Polish National Studs
Article Snippet: .. Identity among sequences analysed in the study was calculated using the “Sequence Identity Matrix” formula in BioEdit and illustrated as heatmaps using a Sequence Demarcation Tool Version 1.3 (SDTv1.3) [ ]. ..

Article Title: Cowpea mild mottle virus ( Carlavirus vignae ) identified as one of the agents associated with veinal necrosis and bud blight disease in soybean ( Glycine max L.) in India.
Article Snippet: .. To assess genetic relatedness, multiple sequence alignments were performed with representative isolates of CPMMV and other carlavirus species available in public databases using ClustalW programme (Larkin 2007) and a sequence identity matrix was generated using BioEdit software (version 7.7) (Hall 1999), to understand the identity percentage among CP sequences. ..

Article Title: Transcriptional Silencing of 35S rDNA in Tragopogon porrifolius Correlates with Cytosine Methylation in Sequence-Specific Manner
Article Snippet: .. The sequence identity between individual promoters was computed from the SNP distributions using the Sequence Identity matrix implemented in BioEdit 7.2.5 (12/11/2013) ( ). .. Statistical supports of the differences between samples (methylation density between rDNA variants, between tissues, and between individual cytosines) were estimated by both the non-parametric Mann–Whitney U-test ( http://vassarstats.net/utest.html ; access from 11 March 2022 to 13 February 2024) and parametric Student’s t -test (Microsoft Excel, Microsoft 365).

Article Title: Genetic Diversity of Equid Herpesvirus 5 in Temporal Samples from Mares and Their Foals at Three Polish National Studs.
Article Snippet: .. Identity among sequences analysed in the study was calculated using the “Sequence Identity Matrix” formula in BioEdit and illustrated as heatmaps using a Sequence Demarcation Tool Version 1.3 (SDTv1.3) [34]. ..

Article Title: Genomic characteristics of 12 HBV-I strains in the 2020 national HBV serosurvey in China
Article Snippet: .. Homology scores were calculated using the Sequence Identity Matrix in Bioedit software (v7.7.1). ..

Generated:

Article Title: Molecular characterization and clinical insights into feline chaphamaparvovirus (FeChPV) in cats from Thailand.
Article Snippet: .. Multiple sequence alignments were performed using MAFFT online service (available at https://mafft.cbrc.jp/alignment/server/index.html) (Katoh et al., 2017), and the sequence identity matrices of the complete CDS from FeChPV Thai strains and the databases were generated using Sequence Identity Matrix available in BioEdit. .. The best-fit models for phylogenetic analyses were the Tamura-Nei model with gamma distribution (TN93 + G + I) for the CDS and NS1 gene and the Hasegawa-Kishino-Yano (HKY + G + I) for the VP1 gene.

Article Title: Cowpea mild mottle virus ( Carlavirus vignae ) identified as one of the agents associated with veinal necrosis and bud blight disease in soybean ( Glycine max L.) in India.
Article Snippet: .. To assess genetic relatedness, multiple sequence alignments were performed with representative isolates of CPMMV and other carlavirus species available in public databases using ClustalW programme (Larkin 2007) and a sequence identity matrix was generated using BioEdit software (version 7.7) (Hall 1999), to understand the identity percentage among CP sequences. ..



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